Homework 7
Homework Assignment #7 (200 points)
The due date for this homework is Monday, April 7th by 11:59pm.
- PART A (50 points): BASH script (.sh) used to perform the alignment and create BAM file
- PART B (50 points): BASH script (.sh) used to count reads or other downstream processing files.
- PART C (50 points): Final MULTIQC (.html) output displaying plots from the alignment, counting, and RSeQC stage.
- PART D (50 points): Fill out the table below for your samples. Submit the filled-out table in a separate Microsoft Word document (.docx).
Most of these file types will not be accepted by Brightspace, therefore, please send me ONE email with PARTS A-D included. Late homework will be docked 10% of the overall grade for every day that the assignment is late. An assignment is considered late if it is not submitted by the date and time specified. Three days past the due date (weekend included), the assignment will no longer be accepted, and the student(s) will receive a ZERO.
Please try your best to get through this homework assignment on your own using the following materials:
Information about Genome Indexes
Additional Resources for RseQC
We will have a course-catch up day dedicated to answering your questions regarding HW#7 on Monday, March 31st. I decided that April 2nd would be too late.