Overview Slide Overview Slides will be made available as a PDF printout document. These lessons can be reviewed prior to class start. Introducing the Shell (L1) Navigating the Shell (L2) Wildcards & Nano (L3) Searching & Redirection (L4) Intro to Shell Scripting (L5) RNA-Seq Overview (L7) Accessing Public Data (L8) Assessing FASTQC Outputs (L9) Trimming & Filtering (L10) Alignment (L11-13) Alignment Outputs (L15) RSeQC (L16) Counting Reads (L17)